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Publications

How many neurons are sufficient for perception of cortical activity?

Dalgleish HW. et al, (2020), Elife, 9

In Search Of Common Developmental And Evolutionary Origin Of The Claustrum And Subplate.

Bruguier H. et al, (2020), J Comp Neurol

Closed-loop all-optical interrogation of neural circuits in vivo.

Zhang Z. et al, (2018), Nat Methods, 15, 1037 - 1040

Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit

Aitchison L. et al, (2017), Advances in Neural Information Processing Systems, 2017-December, 3487 - 3496

PackIO and EphysViewer: software tools for acquisition and analysis of neuroscience data

Watson B. et al, (2016), BioRxiv

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.

Packer AM. et al, (2015), Nat Methods, 12, 140 - 146

Erratum: Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo (Nature Methods (2015) 12 (140-146))

Packer AM. et al, (2015), Nature Methods, 12

Axo-dendritic overlap and laminar projection can explain interneuron connectivity to pyramidal cells.

Packer AM. et al, (2013), Cereb Cortex, 23, 2790 - 2802

Targeting neurons and photons for optogenetics.

Packer AM. et al, (2013), Nat Neurosci, 16, 805 - 815

The logic of inhibitory connectivity in the neocortex.

Fino E. et al, (2013), Neuroscientist, 19, 228 - 237

Extracting regions of interest from biological images with convolutional sparse block coding

Pachitariu M. et al, (2013), Advances in Neural Information Processing Systems

Inferring neural population dynamics from multiple partial recordings of the same neural circuit

Turaga SC. et al, (2013), Advances in Neural Information Processing Systems

Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation.

Prakash R. et al, (2012), Nat Methods, 9, 1171 - 1179

Two-photon optogenetics of dendritic spines and neural circuits.

Packer AM. et al, (2012), Nat Methods, 9, 1202 - 1205

Dense, unspecific connectivity of neocortical parvalbumin-positive interneurons: a canonical microcircuit for inhibition?

Packer AM. and Yuste R., (2011), J Neurosci, 31, 13260 - 13271

Designing optimal stimuli to control neuronal spike timing.

Ahmadian Y. et al, (2011), J Neurophysiol, 106, 1038 - 1053

Fast nonnegative deconvolution for spike train inference from population calcium imaging.

Vogelstein JT. et al, (2010), J Neurophysiol, 104, 3691 - 3704

A neural circuit for angular velocity computation.

Snider SB. et al, (2010), Front Neural Circuits, 4

Quantitative classification of somatostatin-positive neocortical interneurons identifies three interneuron subtypes.

McGarry LM. et al, (2010), Front Neural Circuits, 4

Spike inference from calcium imaging using sequential Monte Carlo methods.

Vogelstein JT. et al, (2009), Biophys J, 97, 636 - 655

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